It was fun, and frustrating at the same time to work with a jupyter notebook. Running it on your computer is so much fun. Thanks to NGLViewer I was able to show the structures in a more interactive way. Writing everything in Jupyter notebook and uploading it to Github is a nice combination. The source of the frustration was trying to keep the html interactive. But found a workaround for that by rendering each cell output in a separate html window within ipython.
The resources in Turkish are very limited. I wrote this tutorial for EpiSTEM Turkiye . It is an initiative by Gozde Eskici. Our aim is to provide reliable scientific information in Turkish. We do our best to explain the scientific jargon in our posts so that anyone can understand.